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Pages

Posts

Blog Post number 1

less than 1 minute read

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This is a sample blog post. Lorem ipsum I can’t remember the rest of lorem ipsum and don’t have an internet connection right now. Testing testing testing this blog post. Blog posts are cool.

projects

publications

The within-subject application of diffusion tensor MRI and CLARITY reveals brain structural changes in Nrxn2 deletion mice

Published in Molecular Autism, 2019

You can read the paper here.

Recommended citation: Pervolaraki, E.*, Tyson, A. L.*, Pibiri, F., Poulter, S. L., Reichelt, A. C., Rodgers, R. J., Clapcote, S. J., Lever, C., Andreae, L. C.*, Dachtler, J.* (2019). "The within-subject application of diffusion tensor MRI and CLARITY reveals brain structural changes in Nrxn2 deletion mice" Mol. Autism v10 p8.

Metabolic Fingerprinting Links Oncogenic PIK3CA with Enhanced Arachidonic Acid-Derived Eicosanoids

Published in Cell, 2020

You can read the paper here and find the software for:

  • Quantification of proximity ligation assay images here.
  • Quantification of acini images here.
  • Quantification of calcium flux here.

Recommended citation: Koundouros, N., Karali, E., Tripp, A., Valle, A., Inglese, P., Perry, N. J. S, Magee, D. J., Virmouni, S. A., Elder, G. A., Tyson, A. L., Luisa Doria, M., van Weverwijk, A., Soares, R. F., Isacke, C. M., Nicholson, J. K., Glen, R. C., Takats, Z., Poulogiannis, G. (2020) "Metabolic Fingerprinting Links Oncogenic PIK3CA with Enhanced Arachidonic Acid-Derived Eicosanoids" Cell v181 p1

BrainGlobe Atlas API: a common interface for neuroanatomical atlases

Published in Journal of Open Source Software, 2020

You can read the paper here and find the software here.

Recommended citation: Claudi, F.*, Petrucco, L.*, Tyson, A. L.*, Branco, T., Margrie, T. W., Portugues, R. (2020) "BrainGlobe Atlas API: a common interface for neuroanatomical atlases" Journal of Open Source Software, 5(54), 2668

talks

teaching

Introduction to Image Analysis in FIJI

Technical course, Institute of Cancer Research, 2018

Introduction to fundamental image analysis using FIJI for students & staff, taught at the Institute of Cancer Research, London, U.K. Slides and course materials can be found here.

PyStarters - Introduction to Python Programming

Technical course, Sainsbury Wellcome Centre, 2018

Ongoing Python programming and general software carpentry course (with a focus on neuroscience) taught at the Sainsbury Wellcome Centre, UCL, U.K. All materials can be found here.