cell-coloc3D - measure distribution of a marker per cell in a manually segmented object

MATLAB software as used for the quantification of 3D acini formation in Koundouros et al. (2020). Following manual segmentation of a structure (e.g. a spheroid), individual cells are segmented, and the expression of a marker within these cells is quantified. See the GitHub repo here.

Image from Koundouros et al. (2020)